STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102223797Thrombospondin 4b. (940 aa)    
Predicted Functional Partners:
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.934
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
   
 0.926
LOC102221313
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
  0.925
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
    
 0.909
LOC102235985
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.902
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.772
LOC102234716
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.743
LOC102222515
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.743
itga8
Integrin, alpha 8; Belongs to the integrin alpha chain family.
   
  0.740
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.735
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.