STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102228794Kruppel-like factor 1 (erythroid). (368 aa)    
Predicted Functional Partners:
LOC102234948
Pre-B-cell leukemia transcription factor 4.
    
 0.587
atxn1
Ataxin 1a.
   
 
 0.546
LOC102226641
Ethanolamine kinase 2.
     
 0.534
LOC102222616
Uncharacterized protein.
  
 
   0.430
rps27a
Ribosomal protein S27a.
    
  0.429
LOC102221305
GATA binding protein 1a.
   
 0.425
LOC102223432
Uncharacterized protein.
   
 0.425
LOC102236891
T-cell acute lymphocytic leukemia 1.
   
 0.421
ENSXMAP00000039212
BHLH domain-containing protein.
   
 0.421
LOC102238385
Transmembrane anterior posterior transformation 1a.
      
 0.416
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.