tube1 protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tube1

Tubulin, epsilon 1; Belongs to the tubulin family. (474 aa)

Predicted Functional Partners:

mad2l1

0.701

Wdr90

0.698

ENSXMAP00000030064

0.698

cenpk

0.688

cenpm

0.674

LOC106700148

0.654

tuba4a

0.654

LOC102223550

0.654

LOC102224061

0.654

M4AZ83_XIPMA

0.654

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXMAP00000030064	LOC102223550	ENSXMAP00000030064	ENSXMAP00000015982	WD_REPEATS_REGION domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.648
ENSXMAP00000030064	LOC102224061	ENSXMAP00000030064	ENSXMAP00000015984	WD_REPEATS_REGION domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.648
ENSXMAP00000030064	LOC106700148	ENSXMAP00000030064	ENSXMAP00000009363	WD_REPEATS_REGION domain-containing protein.	Tubulin domain-containing protein.	0.648
ENSXMAP00000030064	M4AZ83_XIPMA	ENSXMAP00000030064	ENSXMAP00000019778	WD_REPEATS_REGION domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.648
ENSXMAP00000030064	Wdr90	ENSXMAP00000030064	ENSXMAP00000027655	WD_REPEATS_REGION domain-containing protein.	DUF667 domain-containing protein.	0.959
ENSXMAP00000030064	tuba4a	ENSXMAP00000030064	ENSXMAP00000010745	WD_REPEATS_REGION domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.648
ENSXMAP00000030064	tube1	ENSXMAP00000030064	ENSXMAP00000005198	WD_REPEATS_REGION domain-containing protein.	Tubulin, epsilon 1; Belongs to the tubulin family.	0.698
LOC102223550	ENSXMAP00000030064	ENSXMAP00000015982	ENSXMAP00000030064	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	WD_REPEATS_REGION domain-containing protein.	0.648
LOC102223550	Wdr90	ENSXMAP00000015982	ENSXMAP00000027655	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	DUF667 domain-containing protein.	0.648
LOC102223550	tube1	ENSXMAP00000015982	ENSXMAP00000005198	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin, epsilon 1; Belongs to the tubulin family.	0.654
LOC102224061	ENSXMAP00000030064	ENSXMAP00000015984	ENSXMAP00000030064	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	WD_REPEATS_REGION domain-containing protein.	0.648
LOC102224061	Wdr90	ENSXMAP00000015984	ENSXMAP00000027655	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	DUF667 domain-containing protein.	0.648
LOC102224061	tube1	ENSXMAP00000015984	ENSXMAP00000005198	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin, epsilon 1; Belongs to the tubulin family.	0.654
LOC106700148	ENSXMAP00000030064	ENSXMAP00000009363	ENSXMAP00000030064	Tubulin domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.648
LOC106700148	M4AZ83_XIPMA	ENSXMAP00000009363	ENSXMAP00000019778	Tubulin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.919
LOC106700148	Wdr90	ENSXMAP00000009363	ENSXMAP00000027655	Tubulin domain-containing protein.	DUF667 domain-containing protein.	0.648
LOC106700148	tube1	ENSXMAP00000009363	ENSXMAP00000005198	Tubulin domain-containing protein.	Tubulin, epsilon 1; Belongs to the tubulin family.	0.654
M4AZ83_XIPMA	ENSXMAP00000030064	ENSXMAP00000019778	ENSXMAP00000030064	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	WD_REPEATS_REGION domain-containing protein.	0.648
M4AZ83_XIPMA	LOC106700148	ENSXMAP00000019778	ENSXMAP00000009363	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin domain-containing protein.	0.919
M4AZ83_XIPMA	Wdr90	ENSXMAP00000019778	ENSXMAP00000027655	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	DUF667 domain-containing protein.	0.648