aspa protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

aspa

Aspartoacylase. (461 aa)

Predicted Functional Partners:

nat8l

0.939

LOC102218509

0.920

LOC102227815

0.904

LOC102228075

0.904

LOC106700049

0.904

ASS1

0.902

LOC102226323

0.901

LOC102225475

0.901

asns

0.901

LOC102234110

0.901

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASS1	LOC102218509	ENSXMAP00000005589	ENSXMAP00000041330	Argininosuccinate synthase 1.	Amine oxidase.	0.900
ASS1	LOC102225475	ENSXMAP00000005589	ENSXMAP00000009440	Argininosuccinate synthase 1.	Si:dkey-103j14.5.	0.900
ASS1	LOC102226323	ENSXMAP00000005589	ENSXMAP00000006767	Argininosuccinate synthase 1.	Adenylosuccinate synthetase isozyme 1; Component of the purine nucleotide cycle (PNC), which interconverts IMP and AMP to regulate the nucleotide levels in various tissues, and which contributes to glycolysis and ammoniagenesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.947
ASS1	LOC102227815	ENSXMAP00000005589	ENSXMAP00000008307	Argininosuccinate synthase 1.	Amine oxidase.	0.901
ASS1	LOC102228075	ENSXMAP00000005589	ENSXMAP00000022498	Argininosuccinate synthase 1.	Amine oxidase.	0.901
ASS1	LOC102234110	ENSXMAP00000005589	ENSXMAP00000024684	Argininosuccinate synthase 1.	Adenylosuccinate synthetase isozyme 2; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.947
ASS1	LOC106700049	ENSXMAP00000005589	ENSXMAP00000033789	Argininosuccinate synthase 1.	Amine oxidase.	0.901
ASS1	asns	ENSXMAP00000005589	ENSXMAP00000016897	Argininosuccinate synthase 1.	Asparagine synthetase [glutamine-hydrolyzing].	0.963
ASS1	aspa	ENSXMAP00000005589	ENSXMAP00000005348	Argininosuccinate synthase 1.	Aspartoacylase.	0.902
ASS1	nat8l	ENSXMAP00000005589	ENSXMAP00000001762	Argininosuccinate synthase 1.	N-acetyltransferase 8-like.	0.902
LOC102218509	ASS1	ENSXMAP00000041330	ENSXMAP00000005589	Amine oxidase.	Argininosuccinate synthase 1.	0.900
LOC102218509	LOC102225475	ENSXMAP00000041330	ENSXMAP00000009440	Amine oxidase.	Si:dkey-103j14.5.	0.900
LOC102218509	LOC102226323	ENSXMAP00000041330	ENSXMAP00000006767	Amine oxidase.	Adenylosuccinate synthetase isozyme 1; Component of the purine nucleotide cycle (PNC), which interconverts IMP and AMP to regulate the nucleotide levels in various tissues, and which contributes to glycolysis and ammoniagenesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.902
LOC102218509	LOC102227815	ENSXMAP00000041330	ENSXMAP00000008307	Amine oxidase.	Amine oxidase.	0.908
LOC102218509	LOC102228075	ENSXMAP00000041330	ENSXMAP00000022498	Amine oxidase.	Amine oxidase.	0.908
LOC102218509	LOC102234110	ENSXMAP00000041330	ENSXMAP00000024684	Amine oxidase.	Adenylosuccinate synthetase isozyme 2; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.902
LOC102218509	LOC106700049	ENSXMAP00000041330	ENSXMAP00000033789	Amine oxidase.	Amine oxidase.	0.908
LOC102218509	asns	ENSXMAP00000041330	ENSXMAP00000016897	Amine oxidase.	Asparagine synthetase [glutamine-hydrolyzing].	0.906
LOC102218509	aspa	ENSXMAP00000041330	ENSXMAP00000005348	Amine oxidase.	Aspartoacylase.	0.920
LOC102218509	nat8l	ENSXMAP00000041330	ENSXMAP00000001762	Amine oxidase.	N-acetyltransferase 8-like.	0.900