STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmieTransmembrane inner ear. (226 aa)    
Predicted Functional Partners:
TMC1
Transmembrane channel-like protein.
     
 0.597
tmc3
Transmembrane channel-like protein.
     
 0.535
lhfpl5
LHFPL tetraspan subfamily member 5b.
     
 0.520
LOC102231926
LHFPL tetraspan subfamily member 5a.
     
 0.520
LOC102219658
Calcium and integrin binding family member 3.
     
 0.510
cib1
Calcium and integrin binding 1 (calmyrin).
     
 0.510
CIB2
Calcium and integrin binding family member 2.
     
 0.510
LOC102234165
Calcium and integrin binding family member 2.
     
 0.510
M3ZGB8_XIPMA
LHFPL tetraspan subfamily member 4a.
     
 0.476
LOC102228306
LHFPL tetraspan subfamily member 3.
     
 0.476
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.