STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ormdl1ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 
 0.869
sptssb
Serine palmitoyltransferase, small subunit B.
      
 0.583
LOC102219609
AMOP domain-containing protein.
    
 
 0.568
ism1
Isthmin 1.
    
 
 0.568
LOC102224346
Serine palmitoyltransferase, long chain base subunit 2b.
    
 
 0.568
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 
 0.568
ism2
Isthmin 2b.
    
 
 0.568
LOC102233023
Serine palmitoyltransferase, long chain base subunit 2a.
    
 
 0.568
gcat
Glycine C-acetyltransferase.
    
 
 0.466
LOC102222797
5-aminolevulinate synthase.
    
 
 0.466
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.