STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pms1PMS1 homolog 1, mismatch repair system component. (860 aa)    
Predicted Functional Partners:
mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
  
 
0.989
msh6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.978
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.965
ENSXMAP00000025311
DNA_MISMATCH_REPAIR_2 domain-containing protein.
 
 0.964
ENSXMAP00000034387
DNA_MISMATCH_REPAIR_2 domain-containing protein.
 
 0.964
msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.956
MSH3
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
 
 0.942
msh5
MutS homolog 5.
 
 0.933
exo1
Exonuclease 1.
   
 0.930
ENSXMAP00000034984
MutS_I domain-containing protein.
  
 0.898
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.