STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102228685Homeobox protein. (294 aa)    
Predicted Functional Partners:
olfml2a
Olfactomedin-like 2A.
      
 0.532
olfm2
Olfactomedin 2a.
      
 0.526
tbx4
T-box transcription factor 4.
   
 
 0.482
LOC102237981
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
      
 0.465
nr4a2
Nuclear receptor subfamily 4, group A, member 2b.
    
 
 0.416
lrtm2
Leucine-rich repeats and transmembrane domains 2a.
   
 
 0.412
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.411
snx16
Sorting nexin 16.
      
 0.410
th
Tyrosine hydroxylase.
      
 0.403
ripk2
Receptor-interacting serine-threonine kinase 2.
      
 0.400
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.