LOC102224048 protein (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102224048

Contactin associated protein like 3. (1310 aa)

Predicted Functional Partners:

cntn2

0.468

LOC102224592

0.430

LOC102224856

0.430

LOC102227310

0.430

cntn5

0.430

cntn1

0.430

CNTN1

0.430

LOC102220967

0.430

LOC102230670

0.430

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	LOC102224048	ENSXMAP00000026099	ENSXMAP00000006057	Contactin 1.	Contactin associated protein like 3.	0.430
CNTN1	cntn1	ENSXMAP00000026099	ENSXMAP00000009355	Contactin 1.	Contactin 1b.	0.901
LOC102220967	LOC102224048	ENSXMAP00000031972	ENSXMAP00000006057	Contactin 3a, tandem duplicate 1.	Contactin associated protein like 3.	0.430
LOC102224048	CNTN1	ENSXMAP00000006057	ENSXMAP00000026099	Contactin associated protein like 3.	Contactin 1.	0.430
LOC102224048	LOC102220967	ENSXMAP00000006057	ENSXMAP00000031972	Contactin associated protein like 3.	Contactin 3a, tandem duplicate 1.	0.430
LOC102224048	LOC102224592	ENSXMAP00000006057	ENSXMAP00000005801	Contactin associated protein like 3.	Contactin 4.	0.430
LOC102224048	LOC102224856	ENSXMAP00000006057	ENSXMAP00000005860	Contactin associated protein like 3.	Uncharacterized protein.	0.430
LOC102224048	LOC102227310	ENSXMAP00000006057	ENSXMAP00000005957	Contactin associated protein like 3.	Contactin 3b.	0.430
LOC102224048	LOC102230670	ENSXMAP00000006057	ENSXMAP00000034301	Contactin associated protein like 3.	Contactin 3a, tandem duplicate 2.	0.430
LOC102224048	cntn1	ENSXMAP00000006057	ENSXMAP00000009355	Contactin associated protein like 3.	Contactin 1b.	0.430
LOC102224048	cntn2	ENSXMAP00000006057	ENSXMAP00000002659	Contactin associated protein like 3.	Contactin 2.	0.468
LOC102224048	cntn5	ENSXMAP00000006057	ENSXMAP00000007622	Contactin associated protein like 3.	Contactin 5.	0.430
LOC102224592	LOC102224048	ENSXMAP00000005801	ENSXMAP00000006057	Contactin 4.	Contactin associated protein like 3.	0.430
LOC102224856	LOC102224048	ENSXMAP00000005860	ENSXMAP00000006057	Uncharacterized protein.	Contactin associated protein like 3.	0.430
LOC102227310	LOC102224048	ENSXMAP00000005957	ENSXMAP00000006057	Contactin 3b.	Contactin associated protein like 3.	0.430
LOC102230670	LOC102224048	ENSXMAP00000034301	ENSXMAP00000006057	Contactin 3a, tandem duplicate 2.	Contactin associated protein like 3.	0.430
cntn1	CNTN1	ENSXMAP00000009355	ENSXMAP00000026099	Contactin 1b.	Contactin 1.	0.901
cntn1	LOC102224048	ENSXMAP00000009355	ENSXMAP00000006057	Contactin 1b.	Contactin associated protein like 3.	0.430
cntn2	LOC102224048	ENSXMAP00000002659	ENSXMAP00000006057	Contactin 2.	Contactin associated protein like 3.	0.468
cntn5	LOC102224048	ENSXMAP00000007622	ENSXMAP00000006057	Contactin 5.	Contactin associated protein like 3.	0.430