STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102234695Uncharacterized protein. (660 aa)    
Predicted Functional Partners:
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.984
TLR5
Toll like receptor 5; Belongs to the Toll-like receptor family.
  
  
 
0.903
unc93b1
Unc-93 homolog B1, TLR signaling regulator.
    
 0.746
nod2
Nucleotide-binding oligomerization domain containing 2.
   
  
 0.695
AIF1
Allograft inflammatory factor 1.
   
 0.687
aif1l
Allograft inflammatory factor 1-like.
   
 0.684
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.648
LOC102216928
Uncharacterized protein.
   
  
 0.632
tirap
Toll-interleukin 1 receptor (TIR) domain containing adaptor protein.
   
 0.591
ADGRL3
Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.
   
   0.554
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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