STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx39aUncharacterized protein. (427 aa)    
Predicted Functional Partners:
thoc2
THO complex 2.
   
 0.973
LOC102217946
Aly/REF export factor.
   
 0.965
sarnp
SAP domain containing ribonucleoprotein.
   
 0.964
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
0.957
LOC102220164
RRM domain-containing protein.
   
 0.957
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.952
thoc1
THO complex 1.
   
 0.949
thoc5
THO complex 5.
   
 0.947
thoc7
THO complex 7.
   
 0.935
zc3h13
Zinc finger CCCH-type containing 13.
   
 0.915
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.