STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102219350Uncharacterized protein. (155 aa)    
Predicted Functional Partners:
LOC102225458-2
Heat shock 10 protein 1; Belongs to the GroES chaperonin family.
     
 0.712
cutc
CutC copper transporter homolog (E. coli).
      
 0.653
mocs1
Molybdenum cofactor synthesis 1.
     
 0.648
ccs
Copper chaperone for superoxide dismutase.
      
 0.613
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.609
atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
     
 0.581
washc4
WASH complex subunit 4.
      
 0.564
dus3l
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
     
 0.515
LOC102231870
Filamin binding LIM protein 1.
    
 
 0.488
stk11ip
Serine/threonine kinase 11 interacting protein.
      
 0.487
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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