STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102225510Calumenin b. (315 aa)    
Predicted Functional Partners:
tnpo3
Transportin 3.
      
 0.631
LOC102220809
Calreticulin.
   
 
 0.581
fkbp10
Peptidylprolyl isomerase.
   
 
 0.533
LOC102233525
FAM20C golgi associated secretory pathway kinase a.
    
  0.526
LOC102221877
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
   
 
 0.509
ltbp2
Uncharacterized protein.
   
  
 0.494
LOC102224227
Uncharacterized protein; Belongs to the cytochrome P450 family.
      
 0.493
palld
Palladin, cytoskeletal associated protein.
    
 
 0.493
TGFB1I1
Transforming growth factor beta-1-induced transcript 1 protein; Functions as a molecular adapter coordinating multiple protein-protein interactions at the focal adhesion complex and in the nucleus. Links various intracellular signaling modules to plasma membrane receptors and regulates the Wnt and TGFB signaling pathways.
      
 0.487
Atoh8
BHLH domain-containing protein.
      
 0.487
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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