REL protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

REL

REL proto-oncogene, NF-kB subunit. (638 aa)

Predicted Functional Partners:

nfkbia

0.814

LOC102217801

0.814

nfkb1

0.812

nfkb2

0.810

setd6

0.772

LOC102230576

0.751

LOC102221134

0.751

LOC102235592

0.730

LOC102226082

0.730

LOC102230915

0.713

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102217801	LOC102221134	ENSXMAP00000011794	ENSXMAP00000021600	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	CREB binding protein a.	0.421
LOC102217801	LOC102230576	ENSXMAP00000011794	ENSXMAP00000004610	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	CREB binding protein b.	0.421
LOC102217801	LOC102230915	ENSXMAP00000011794	ENSXMAP00000004302	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	V-rel avian reticuloendotheliosis viral oncogene homolog B.	0.814
LOC102217801	REL	ENSXMAP00000011794	ENSXMAP00000007400	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	REL proto-oncogene, NF-kB subunit.	0.814
LOC102217801	nfkb1	ENSXMAP00000011794	ENSXMAP00000015462	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.885
LOC102217801	nfkb2	ENSXMAP00000011794	ENSXMAP00000000208	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.892
LOC102217801	nfkbia	ENSXMAP00000011794	ENSXMAP00000009426	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.904
LOC102221134	LOC102217801	ENSXMAP00000021600	ENSXMAP00000011794	CREB binding protein a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.421
LOC102221134	LOC102226082	ENSXMAP00000021600	ENSXMAP00000009770	CREB binding protein a.	E1A binding protein p300 a.	0.992
LOC102221134	LOC102230576	ENSXMAP00000021600	ENSXMAP00000004610	CREB binding protein a.	CREB binding protein b.	0.901
LOC102221134	LOC102230915	ENSXMAP00000021600	ENSXMAP00000004302	CREB binding protein a.	V-rel avian reticuloendotheliosis viral oncogene homolog B.	0.751
LOC102221134	LOC102235592	ENSXMAP00000021600	ENSXMAP00000003713	CREB binding protein a.	E1A binding protein p300 b.	0.992
LOC102221134	REL	ENSXMAP00000021600	ENSXMAP00000007400	CREB binding protein a.	REL proto-oncogene, NF-kB subunit.	0.751
LOC102221134	nfkb1	ENSXMAP00000021600	ENSXMAP00000015462	CREB binding protein a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.638
LOC102221134	nfkb2	ENSXMAP00000021600	ENSXMAP00000000208	CREB binding protein a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.638
LOC102221134	nfkbia	ENSXMAP00000021600	ENSXMAP00000009426	CREB binding protein a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.421
LOC102226082	LOC102221134	ENSXMAP00000009770	ENSXMAP00000021600	E1A binding protein p300 a.	CREB binding protein a.	0.992
LOC102226082	LOC102230576	ENSXMAP00000009770	ENSXMAP00000004610	E1A binding protein p300 a.	CREB binding protein b.	0.992
LOC102226082	LOC102230915	ENSXMAP00000009770	ENSXMAP00000004302	E1A binding protein p300 a.	V-rel avian reticuloendotheliosis viral oncogene homolog B.	0.730
LOC102226082	LOC102235592	ENSXMAP00000009770	ENSXMAP00000003713	E1A binding protein p300 a.	E1A binding protein p300 b.	0.902