STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102230556BTB domain containing 6. (482 aa)    
Predicted Functional Partners:
LOC102230920
Potassium channel tetramerization domain containing 6b.
    
 0.564
bbs9
Bardet-Biedl syndrome 9.
    
 0.564
LOC102221121
Cullin 3; Belongs to the cullin family.
    
 0.548
LOC102235624
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.548
GAN
Gigaxonin.
     
 0.540
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.531
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.518
LOC102225863
TIP120 domain-containing protein.
     
 0.518
ttc8
Tetratricopeptide repeat domain 8.
    
 0.514
bbs7
Bardet-Biedl syndrome 7.
    
 0.502
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.