STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)    
Predicted Functional Partners:
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 0.999
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.999
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.999
yju2
YJU2 splicing factor homolog.
    
 0.997
ccdc12
Coiled-coil domain containing 12.
    
  0.997
cwc25
CWC25 spliceosome associated protein homolog.
    
 0.997
slu7
SLU7 homolog, splicing factor.
   
 0.996
cwf19l2
CWF19 like cell cycle control factor 2.
   
 0.995
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.994
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.994
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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