STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (766 aa)    
Predicted Functional Partners:
gemin5
Gem (nuclear organelle) associated protein 5.
   
 0.997
LOC102216861
Survival of motor neuron 1, telomeric.
    
 0.997
gemin4
Gem (nuclear organelle) associated protein 4.
   
 0.997
gemin7
Gem (nuclear organelle) associated protein 7.
    
 0.994
gemin8
Gem (nuclear organelle) associated protein 8.
    
 0.993
strap
Serine/threonine kinase receptor associated protein.
    
 0.984
gemin6
Gem (nuclear organelle) associated protein 6.
     
 0.973
gemin2
Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.
   
 0.867
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.849
nup214
Nup214_FG domain-containing protein.
    
 0.841
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.