STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn5Contactin 5. (1098 aa)    
Predicted Functional Partners:
ptprg
Carbonic anhydrase XVI b.
    
 0.619
LOC102232862
Amyloid beta (A4) precursor protein b.
   
 
 0.545
APP
Amyloid beta precursor protein.
   
 
 0.545
nrcam
Neuronal cell adhesion molecule a.
    
0.536
LOC102230406
Uncharacterized protein.
    
0.536
NRCAM
Uncharacterized protein.
    
0.536
LOC102237689
Uncharacterized protein.
    
0.536
l1cam
L1 cell adhesion molecule, paralog a.
    
0.536
LOC102218752
Uncharacterized protein.
    
0.536
nfasc
Neurofascin homolog (chicken) a.
    
0.536
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.