STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102219250Uncharacterized protein. (444 aa)    
Predicted Functional Partners:
LOC102230567
Runt-related transcription factor.
   
 0.720
LOC102223887
Runt-related transcription factor.
   
 0.677
LOC102236639
Runt-related transcription factor.
   
 0.677
LOC102216610
Runt domain-containing protein.
   
 0.655
LOC102233635
Inhibitor of DNA binding 1, HLH protein.
     
 0.622
LOC102220740
Paired box 2b.
   
 
 0.536
LOC102234689
Paired box 2a.
   
 
 0.536
pax8
Paired box 8.
   
 
 0.536
pax5
Paired box 5.
   
 
 0.536
ENSXMAP00000038300
Paired domain-containing protein.
   
 
 0.536
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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