STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102217722Uncharacterized protein. (714 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.759
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.616
Cul1
Cullin 1b; Belongs to the cullin family.
    
 0.614
LOC102235594
NEDD8 ubiquitin like modifier.
   
  0.549
LOC102229617
Ubiquitin-like domain-containing protein.
   
  0.549
LOC102218559
RAN binding protein 2.
   
 
  0.500
commd4
COMM domain containing 4.
    
  0.491
gle1
GLE1 RNA export mediator.
    
 0.478
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.438
rps15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.429
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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