STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmnb2Lamin B2; Belongs to the intermediate filament family. (579 aa)    
Predicted Functional Partners:
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.959
LOC102229982
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC102230245
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC106699834
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
ENSXMAP00000025381
Peptidase S1 domain-containing protein.
    
 0.902
banf1
Barrier to autointegration factor 1.
   
 0.760
LOC102220900
Uncharacterized protein.
   
 0.760
lemd3
LEM domain containing 3.
   
 0.705
NUP62
Nucleoporin 62.
   
  
 0.694
nup153
Nucleoporin 153.
    
 
 0.679
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.