STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Synapse defective Rho GTPase homolog 1. (934 aa)    
Predicted Functional Partners:
Meioc
Uncharacterized protein.
      
 0.611
gcm2
GCM domain-containing protein.
      
 0.608
ilvbl
IlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family.
      
 0.589
gen1
Uncharacterized protein.
      
 0.567
rhof
Ras homolog family member F.
    
 0.551
ppp4r3a
SMEK homolog 1, suppressor of mek1 (Dictyostelium).
      
 0.542
barx1
BARX homeobox 1.
      
 0.487
ENSXMAP00000020527
C2 domain-containing protein.
      
 0.487
ENSXMAP00000023381
PDZ domain-containing protein.
      
 0.487
RIMS2
Regulating synaptic membrane exocytosis 2.
      
 0.487
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.