STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102236671RNA binding motif protein 4.1. (419 aa)    
Predicted Functional Partners:
eif2a
Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.
   
    0.491
LOC102226563
RRM domain-containing protein.
  
   
 0.451
srsf2
Serine and arginine rich splicing factor 2a.
  
  
 0.436
LOC102235721
RRM domain-containing protein.
  
   0.432
LOC102220164
RRM domain-containing protein.
  
  
 0.406
LOC102222867
RNA binding motif protein 38.
  
   
 0.406
LOC102234929
Transformer 2 beta homolog.
  
   0.405
LOC102230567
Runt-related transcription factor.
    
  0.404
LOC102216610
Runt domain-containing protein.
    
  0.404
LOC102223887
Runt-related transcription factor.
    
  0.404
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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