STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
klhdc1Uncharacterized protein. (401 aa)    
Predicted Functional Partners:
drg1
Developmentally regulated GTP binding protein 1.
    
   0.482
c2h15orf40
Uncharacterized protein.
    
   0.472
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.472
c2hxorf56
Zgc:103697.
    
   0.472
cs
Citrate synthase; Belongs to the citrate synthase family.
    
   0.472
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.441
klhl20
Kelch-like family member 20.
      
 0.412
vps53
VPS53 subunit of GARP complex.
     
 0.409
LOC102218559
RAN binding protein 2.
   
 0.403
drg2
Developmentally regulated GTP binding protein 2.
    
   0.400
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.