STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
larp7La ribonucleoprotein domain family, member 7. (560 aa)    
Predicted Functional Partners:
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.
   
 0.948
LOC102227836
Si:ch1073-157b13.1.
    
 
 0.926
LOC102219902
Methylphosphate capping enzyme.
    
 
 0.926
LOC102218594
HEXIM P-TEFb complex subunit 1.
    
 
 0.847
LOC102228037
Cyclin T1; Belongs to the cyclin family.
   
 0.747
nhp2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.723
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
   
 0.713
nop10
NOP10 ribonucleoprotein homolog (yeast).
   
  
 0.693
LOC102229697
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 0.687
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 0.687
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.