STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacc1Laccase (multicopper oxidoreductase) domain containing 1. (524 aa)    
Predicted Functional Partners:
plpbp
Pyridoxal phosphate binding protein; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.917
ttf2
Transcription termination factor, RNA polymerase II.
     
 0.694
park7
Parkinson protein 7.
     
 0.662
ccdc122
Uncharacterized protein.
   
  
 0.627
LOC102233533
Translational activator of mitochondrially encoded cytochrome c oxidase I.
     
 0.537
pc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
      
 0.487
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
     
 0.414
ENSXMAP00000030990
Uncharacterized protein.
      
 0.410
iah1
Isoamyl acetate hydrolyzing esterase 1 (putative).
      
 0.408
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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