STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itm2bIntegral membrane protein 2Bb. (258 aa)    
Predicted Functional Partners:
LOC102218352
Tyrosine-protein phosphatase non-receptor type.
   
  
 0.572
Zic2
Zic family member 2 (odd-paired homolog, Drosophila), a.
      
 0.564
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
      
 0.560
pds5b
PDS5 cohesin associated factor B.
      
 0.560
LOC102218169
Uncharacterized protein.
      
 0.560
irf2bp2
Interferon regulatory factor 2 binding protein 2.
      
 0.560
LOC102223847
Uncharacterized protein.
   
 
 0.546
LOC102237671
Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.538
LOC102232044
Protein disulfide isomerase family A, member 8; Belongs to the protein disulfide isomerase family.
    
 
 0.533
cdk8
Cyclin-dependent kinase 8; Belongs to the protein kinase superfamily.
      
 0.532
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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