STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh4AlkB homolog 4, lysine demthylase. (277 aa)    
Predicted Functional Partners:
alkbh7
AlkB homolog 7.
   
  
 0.658
mettl4
Methyltransferase like 4; Belongs to the MT-A70-like family.
      
 0.656
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.647
med28
Mediator complex subunit 28.
      
 0.631
LOC102236364
N-6 adenine-specific DNA methyltransferase 1.
      
 0.623
dohh
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
   
    0.587
jmjd4
Jumonji domain containing 4.
   
  
 0.587
ENSXMAP00000033738
Uncharacterized protein.
   
  
 0.565
Alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
      
 0.560
alkbh8
AlkB homolog 8, tRNA methyltransferase.
   
  
0.507
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.