STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef12Rho guanine nucleotide exchange factor (GEF) 12a. (1270 aa)    
Predicted Functional Partners:
LOC102222912
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.734
GNA13
G protein subunit alpha 13.
    
 0.734
gna12
G protein subunit alpha 12.
    
 0.734
LOC102234531
Uncharacterized protein.
   
 0.641
rnd3
Rho family GTPase 3a.
   
 0.641
LOC102221114
Rho family GTPase 1b.
   
 0.641
LOC102222710
Ras homolog gene family, member Ab.
   
 0.641
RND1
Rho family GTPase 1.
   
 0.641
LOC102229174
Uncharacterized protein.
   
 0.641
LOC102225527
Uncharacterized protein.
   
 0.641
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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