STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102229789Nuclear factor of activated T cells 5a. (1435 aa)    
Predicted Functional Partners:
dkk3
Dickkopf WNT signaling pathway inhibitor 3a.
      
 0.561
CLEC3A
C-type lectin domain family 3 member A.
   
  
 0.561
mical2
Microtubule associated monooxygenase, calponin and LIM domain containing 2a.
      
 0.561
usp47
Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family.
      
 0.561
LOC102224640
Inositol-1-monophosphatase.
      
 0.561
ABI1
Abl-interactor 1a.
      
 0.510
LOC102236979
Glutamine-fructose-6-phosphate transaminase 2.
      
 0.487
TCF4
Transcription factor 4.
      
 0.487
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.