gata4 protein (Xiphophorus maculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gata4

GATA binding protein 4. (396 aa)

Predicted Functional Partners:

LOC102221542

0.912

Sqstm1

0.909

LOC102234531

0.903

LOC102222710

0.903

LOC102229174

0.903

LOC102225527

0.903

LOC102233685

0.903

cgn

0.900

nkx2-5

0.889

bmp4

0.748

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102221542	cgn	ENSXMAP00000036495	ENSXMAP00000007229	Cingulin b.	Cingulin a.	0.902
LOC102221542	gata4	ENSXMAP00000036495	ENSXMAP00000009258	Cingulin b.	GATA binding protein 4.	0.912
LOC102222710	gata4	ENSXMAP00000016927	ENSXMAP00000009258	Ras homolog gene family, member Ab.	GATA binding protein 4.	0.903
LOC102225527	gata4	ENSXMAP00000022072	ENSXMAP00000009258	Uncharacterized protein.	GATA binding protein 4.	0.903
LOC102229174	gata4	ENSXMAP00000019414	ENSXMAP00000009258	Uncharacterized protein.	GATA binding protein 4.	0.903
LOC102233685	gata4	ENSXMAP00000036306	ENSXMAP00000009258	Uncharacterized protein.	GATA binding protein 4.	0.903
LOC102234531	gata4	ENSXMAP00000004471	ENSXMAP00000009258	Uncharacterized protein.	GATA binding protein 4.	0.903
Sqstm1	gata4	ENSXMAP00000022354	ENSXMAP00000009258	Uncharacterized protein.	GATA binding protein 4.	0.909
bmp4	gata4	ENSXMAP00000038253	ENSXMAP00000009258	Bone morphogenetic protein 4.	GATA binding protein 4.	0.748
bmp4	nkx2-5	ENSXMAP00000038253	ENSXMAP00000010285	Bone morphogenetic protein 4.	NK2 homeobox 5.	0.487
cgn	LOC102221542	ENSXMAP00000007229	ENSXMAP00000036495	Cingulin a.	Cingulin b.	0.902
cgn	gata4	ENSXMAP00000007229	ENSXMAP00000009258	Cingulin a.	GATA binding protein 4.	0.900
gata4	LOC102221542	ENSXMAP00000009258	ENSXMAP00000036495	GATA binding protein 4.	Cingulin b.	0.912
gata4	LOC102222710	ENSXMAP00000009258	ENSXMAP00000016927	GATA binding protein 4.	Ras homolog gene family, member Ab.	0.903
gata4	LOC102225527	ENSXMAP00000009258	ENSXMAP00000022072	GATA binding protein 4.	Uncharacterized protein.	0.903
gata4	LOC102229174	ENSXMAP00000009258	ENSXMAP00000019414	GATA binding protein 4.	Uncharacterized protein.	0.903
gata4	LOC102233685	ENSXMAP00000009258	ENSXMAP00000036306	GATA binding protein 4.	Uncharacterized protein.	0.903
gata4	LOC102234531	ENSXMAP00000009258	ENSXMAP00000004471	GATA binding protein 4.	Uncharacterized protein.	0.903
gata4	Sqstm1	ENSXMAP00000009258	ENSXMAP00000022354	GATA binding protein 4.	Uncharacterized protein.	0.909
gata4	bmp4	ENSXMAP00000009258	ENSXMAP00000038253	GATA binding protein 4.	Bone morphogenetic protein 4.	0.748