STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prps1Phosphoribosyl pyrophosphate synthetase 1B. (320 aa)    
Predicted Functional Partners:
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
  
 
 0.950
ppat
Amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
 0.950
rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.947
LOC102234635
Transketolase b.
   
 
 0.942
LOC102224760
Transketolase a.
   
 
 0.942
TKT
Transketolase.
   
 
 0.942
pgm2
Phosphoglucomutase 2.
  
 0.935
umps
Uridine monophosphate synthetase.
  
 
 0.933
pgm1
Phosphoglucomutase 1; Belongs to the phosphohexose mutase family.
   
 
 0.914
LOC102226091
Uncharacterized protein; Belongs to the phosphohexose mutase family.
   
 
 0.914
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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