STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fusTAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (473 aa)    
Predicted Functional Partners:
tardbp
TAR DNA binding protein, like.
   
 0.782
LOC102220505
TAR DNA binding protein.
   
 0.782
LOC102230228
RRM domain-containing protein.
   
 0.776
srsf10
Serine and arginine rich splicing factor 10.
   
 0.773
srsf2
Serine and arginine rich splicing factor 2a.
   
 0.735
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.729
LOC102230106
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.729
taf13
TATA-box binding protein associated factor 13.
   
 0.726
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.720
taf5
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.694
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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