STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102222919Matrix-remodelling associated 8b. (424 aa)    
Predicted Functional Partners:
LDLRAD3
Low density lipoprotein receptor class A domain containing 3.
      
 0.487
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.483
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.428
c14h4orf48
Si:dkeyp-75h12.5.
  
     0.409
LOC102229976
Matrix-remodelling associated 7.
      
 0.408
meak7
MTOR associated protein, eak-7 homolog.
      
 0.406
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.