STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4AM61_XIPMAUncharacterized protein. (115 aa)    
Predicted Functional Partners:
pop5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
 0.997
pop4
POP4 homolog, ribonuclease P/MRP subunit.
   
 0.997
LOC102228671
Ribonuclease P 21 subunit.
   
 0.997
POP1
POP1 homolog, ribonuclease P/MRP subunit.
   
 0.996
rpp40
Ribonuclease P/MRP 40 subunit.
    
 0.982
M4A0D3_XIPMA
Ribonuclease P and MRP subunit p25, b.
    
 0.973
rps9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.914
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 
  0.907
rps7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
  0.906
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.905
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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