STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102237671Lysophosphatidic acid receptor 6a; Belongs to the G-protein coupled receptor 1 family. (352 aa)    
Predicted Functional Partners:
lpar1
Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.690
creld1
Cysteine-rich with EGF-like domains 1b.
      
 0.620
cers2
Ceramide synthase 2b.
      
 0.560
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
     
 0.552
LOC102218352
Tyrosine-protein phosphatase non-receptor type.
      
 0.547
irf2bp2
Interferon regulatory factor 2 binding protein 2.
      
 0.539
itm2b
Integral membrane protein 2Bb.
   
  
 0.538
LOC102218169
Uncharacterized protein.
    
 
 0.528
pds5b
PDS5 cohesin associated factor B.
    
 
 0.527
nox5
NADPH oxidase, EF-hand calcium binding domain 5.
      
 0.510
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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