STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102233806Dehydrogenase/reductase (SDR family) member 7Ca. (328 aa)    
Predicted Functional Partners:
LOC102237741
Zgc:65997; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.665
LOC102231003
Zgc:158868.
   
 
 0.665
LOC102230335
Si:dkey-12e7.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.665
LOC102230219
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.665
tlcd1
TLC domain containing 1.
    
 
 0.656
rimbp2
RIMS binding protein 2.
      
 0.649
akip1
A kinase (PRKA) interacting protein 1.
      
 0.532
rdh12
Retinol dehydrogenase 12.
   
  
 0.519
oxsm
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.506
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
   
 
 0.500
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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