STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102225964RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (381 aa)    
Predicted Functional Partners:
LOC102229344
RNA binding motif protein 24b.
  
 
 0.728
LOC102225518
RNA binding motif protein 24a.
  
 
 0.726
LOC102226563
RRM domain-containing protein.
  
 
 0.715
LOC102222867
RNA binding motif protein 38.
  
 
0.598
RBPMS
RNA binding protein, mRNA processing factor.
   
 
 0.541
cirbp
Cold inducible RNA binding protein b.
  
 
 
 0.531
LOC102222574
ELAV-like protein; Belongs to the RRM elav family.
  
 
 0.527
LOC102237865
QKI, KH domain containing, RNA binding a.
   
 
 0.522
QKI
QKI, KH domain containing, RNA binding 2.
   
 
 0.522
elavl1
ELAV-like protein; Belongs to the RRM elav family.
  
 
 0.517
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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