STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
setd1bSET domain containing 1B, histone lysine methyltransferase a. (1865 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.966
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.966
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.926
cxxc1
CXXC finger protein 1b.
   
 0.837
LOC102235955
CXXC finger protein 1a.
   
 0.837
wdr82
WD repeat domain 82.
   
 0.829
LOC102223222-2
WD_REPEATS_REGION domain-containing protein.
   
 0.829
wdr5
WD repeat domain 5.
   
 0.826
ubb
Ubiquitin B.
   
 0.800
rps27a
Ribosomal protein S27a.
   
  0.778
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.