LOC102236167 protein (Xiphophorus maculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102236167

Si:dkey-76b14.2. (915 aa)

Predicted Functional Partners:

rab35

0.825

LOC102226755

0.825

ift27

0.689

suox

0.596

dennd1a

0.594

LOC102221052

0.577

LOC102219021

0.559

LOC102236163

0.559

rab28

0.465

LOC102232639

0.443

Your Current Organism:

Xiphophorus maculatus

NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102219021	LOC102226755	ENSXMAP00000000534	ENSXMAP00000032280	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Si:dkey-16l2.16.	0.453
LOC102219021	LOC102232639	ENSXMAP00000000534	ENSXMAP00000022139	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.578
LOC102219021	LOC102236163	ENSXMAP00000000534	ENSXMAP00000040288	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.900
LOC102219021	LOC102236167	ENSXMAP00000000534	ENSXMAP00000040064	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	Si:dkey-76b14.2.	0.559
LOC102219021	dennd1a	ENSXMAP00000000534	ENSXMAP00000007580	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	DENN/MADD domain containing 1A.	0.642
LOC102219021	rab35	ENSXMAP00000000534	ENSXMAP00000004030	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	RAB35, member RAS oncogene family b.	0.453
LOC102221052	LOC102226755	ENSXMAP00000029837	ENSXMAP00000032280	CHM Rab escort protein.	Si:dkey-16l2.16.	0.647
LOC102221052	LOC102232639	ENSXMAP00000029837	ENSXMAP00000022139	CHM Rab escort protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.611
LOC102221052	LOC102236167	ENSXMAP00000029837	ENSXMAP00000040064	CHM Rab escort protein.	Si:dkey-76b14.2.	0.577
LOC102221052	dennd1a	ENSXMAP00000029837	ENSXMAP00000007580	CHM Rab escort protein.	DENN/MADD domain containing 1A.	0.589
LOC102221052	ift27	ENSXMAP00000029837	ENSXMAP00000028428	CHM Rab escort protein.	Intraflagellar transport 27.	0.587
LOC102221052	rab28	ENSXMAP00000029837	ENSXMAP00000030416	CHM Rab escort protein.	Uncharacterized protein.	0.616
LOC102221052	rab35	ENSXMAP00000029837	ENSXMAP00000004030	CHM Rab escort protein.	RAB35, member RAS oncogene family b.	0.647
LOC102226755	LOC102219021	ENSXMAP00000032280	ENSXMAP00000000534	Si:dkey-16l2.16.	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	0.453
LOC102226755	LOC102221052	ENSXMAP00000032280	ENSXMAP00000029837	Si:dkey-16l2.16.	CHM Rab escort protein.	0.647
LOC102226755	LOC102232639	ENSXMAP00000032280	ENSXMAP00000022139	Si:dkey-16l2.16.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.667
LOC102226755	LOC102236163	ENSXMAP00000032280	ENSXMAP00000040288	Si:dkey-16l2.16.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.453
LOC102226755	LOC102236167	ENSXMAP00000032280	ENSXMAP00000040064	Si:dkey-16l2.16.	Si:dkey-76b14.2.	0.825
LOC102226755	dennd1a	ENSXMAP00000032280	ENSXMAP00000007580	Si:dkey-16l2.16.	DENN/MADD domain containing 1A.	0.917
LOC102232639	LOC102219021	ENSXMAP00000022139	ENSXMAP00000000534	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	0.578