STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56663.1Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins. (689 aa)    
Predicted Functional Partners:
CED56664.1
Putative exported protein.
       0.773
CED56667.1
Sensor protein, histidine kinase.
 
     0.677
CED56665.1
Putative exported protein.
       0.669
gbpA
GlcNAc-binding protein A; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
  
     0.631
CED56666.1
Transcriptional regulator.
       0.625
CED71336.1
Chitinase.
  
     0.618
CED71436.1
Putative exported protein.
  
     0.553
chiS
Sensor protein.
  
     0.548
CED57354.1
Putative uncharacterized protein.
  
     0.529
CED70545.1
Putative endochitinase.
  
     0.522
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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