CED56667.1 protein (Aliivibrio wodanis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CED56667.1

Sensor protein, histidine kinase. (474 aa)

Predicted Functional Partners:

CED71636.1

0.912

CED56666.1

0.910

CED56665.1

0.810

arcB

0.727

CED56663.1

0.689

luxU

0.643

CED57804.1

0.639

CED56664.1

0.603

CED71668.1

0.603

varS

0.585

Your Current Organism:

Aliivibrio wodanis

NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CED56663.1	CED56664.1	AWOD_II_0004	AWOD_II_0005	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	Putative exported protein.	0.773
CED56663.1	CED56665.1	AWOD_II_0004	AWOD_II_0006	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	Putative exported protein.	0.719
CED56663.1	CED56666.1	AWOD_II_0004	AWOD_II_0007	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	Transcriptional regulator.	0.642
CED56663.1	CED56667.1	AWOD_II_0004	AWOD_II_0008	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	Sensor protein, histidine kinase.	0.689
CED56664.1	CED56663.1	AWOD_II_0005	AWOD_II_0004	Putative exported protein.	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	0.773
CED56664.1	CED56665.1	AWOD_II_0005	AWOD_II_0006	Putative exported protein.	Putative exported protein.	0.603
CED56664.1	CED56666.1	AWOD_II_0005	AWOD_II_0007	Putative exported protein.	Transcriptional regulator.	0.603
CED56664.1	CED56667.1	AWOD_II_0005	AWOD_II_0008	Putative exported protein.	Sensor protein, histidine kinase.	0.603
CED56665.1	CED56663.1	AWOD_II_0006	AWOD_II_0004	Putative exported protein.	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	0.719
CED56665.1	CED56664.1	AWOD_II_0006	AWOD_II_0005	Putative exported protein.	Putative exported protein.	0.603
CED56665.1	CED56666.1	AWOD_II_0006	AWOD_II_0007	Putative exported protein.	Transcriptional regulator.	0.806
CED56665.1	CED56667.1	AWOD_II_0006	AWOD_II_0008	Putative exported protein.	Sensor protein, histidine kinase.	0.810
CED56666.1	CED56663.1	AWOD_II_0007	AWOD_II_0004	Transcriptional regulator.	Putative uncharacterized protein; Lack of similarity at the N-terminus in comparison to other proteins.	0.642
CED56666.1	CED56664.1	AWOD_II_0007	AWOD_II_0005	Transcriptional regulator.	Putative exported protein.	0.603
CED56666.1	CED56665.1	AWOD_II_0007	AWOD_II_0006	Transcriptional regulator.	Putative exported protein.	0.806
CED56666.1	CED56667.1	AWOD_II_0007	AWOD_II_0008	Transcriptional regulator.	Sensor protein, histidine kinase.	0.910
CED56666.1	CED57804.1	AWOD_II_0007	AWOD_II_1189	Transcriptional regulator.	Sensor protein.	0.739
CED56666.1	CED71636.1	AWOD_II_0007	AWOD_I_1564	Transcriptional regulator.	Sensor protein, GGDEF family.	0.900
CED56666.1	CED71668.1	AWOD_II_0007	AWOD_I_1596	Transcriptional regulator.	Sensor protein, histidine kinase.	0.704
CED56666.1	arcB	AWOD_II_0007	AWOD_I_2202	Transcriptional regulator.	Sensor protein.	0.900

page 1 of 4

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About