STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56701.1Cytochrome d ubiquinol oxidase. (528 aa)    
Predicted Functional Partners:
CED56702.1
Cytochrome d ubiquinol oxidase, subunit II.
 0.999
cydB
Cytochrome d ubiquinol oxidase subunit II.
 
 0.979
cydA
Cytochrome d ubiquinol oxidase subunit I.
  
  
 
0.900
cydD
Transport ATP-binding protein CydD.
 
  
 0.872
ybgT
Membrane protein, Cyd operon protein.
 
 
 0.788
cydC
Transport ATP-binding protein CydC.
 
  
 0.786
sdhC
Succinate dehydrogenase cytochrome b556 subunit.
     
 0.558
frdB
Fumarate reductase complex, iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
 0.544
CED70361.1
Fumarate reductase complex, flavoprotein subunit.
     
 0.544
sdhA
Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.544
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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