STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56706.1Putative exported protein; No significant database matches. (253 aa)    
Predicted Functional Partners:
CED56705.1
Putative exported protein; No significant database matches.
 
     0.751
CED56677.1
Exported protein, putative ABC-type amino acid transporer.
  
     0.733
CED57785.1
Putative exported protein.
  
     0.619
CED71107.1
Putative exported protein.
  
     0.616
mshD-2
MSHA pilin protein MshD.
  
     0.515
CED70426.1
Maltose operon periplasmic protein precursor MalM.
  
     0.512
mshP-3
Putative exported protein MshP.
  
     0.511
mshO
MSHA biogenesis protein MshO.
  
     0.490
luxP
Autoinducer 2-binding periplasmic protein LuxP.
  
   
 0.490
mshD-3
Type IV pilus, MSHA pilin protein MshD.
  
     0.486
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.