STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56709.1Putative uncharacterized protein. (600 aa)    
Predicted Functional Partners:
CED56818.1
Extracellular serine protease, subtilase family; Belongs to the peptidase S8 family.
  
 
 0.914
ftsK
DNA translocase FtsK.
    
 
 0.731
CED57916.1
Hemolysin-type calcium-binding protein.
 
 
 0.726
CED71685.1
Putative lipoprotein.
 
  
 0.722
CED71428.1
Membrane protein; No significant database matches.
  
     0.688
CED71880.1
Putative membrane protein.
    
 
 0.664
CED56812.1
TonB-dependent outer membrane receptor.
    
 
 0.652
CED57226.1
TonB-dependent receptor.
    
 
 0.652
prc
Tail-specific protease precursor.
  
   0.642
CED57417.1
Putative uncharacterized protein.
  
     0.571
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.