STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
CED56711.1Putative zinc-containing alcohol dehydrogenase. (332 aa)    
Predicted Functional Partners:
CED71044.1
Putatuve alcohol dehydrogenase.
 
 
 0.624
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
    
   0.543
CED56710.1
HTH-type transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
       0.538
CED56829.1
Glutathione S-transferase; Belongs to the GST superfamily.
 
    0.535
CED56830.1
Putative uncharacterized protein, DJ-1/PfpI family.
 
   0.525
CED57094.1
Putative uncharacterized MaoC domain protein.
 
  
 0.501
catA
Catalase; Belongs to the catalase family.
  
  
 0.471
CED71063.1
MaoC domain protein.
 
  
 0.460
CED56759.1
Putative zinc-containing alcohol dehydrogenase.
 
 
0.453
CED56992.1
Membrane protein.
 
  
 0.425
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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