STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56717.1Transporter, MFS family. (509 aa)    
Predicted Functional Partners:
alaE
Membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.555
CED56997.1
Amino acid permease.
  
 
 
 0.532
uspB
Universal stress protein B.
  
     0.523
CED56996.1
Amino acid permease.
  
 
 
 0.512
CED57427.1
Outer membrane protein, OmpA family.
  
     0.498
CED57430.1
Outer membrane protein, OmpA family.
  
     0.474
CED56988.1
Putative exported protein.
  
     0.472
CED57773.1
Putative exported hemolysin.
  
     0.456
CED71236.1
Outer membrane efflux protein.
  
     0.442
CED56716.1
Membrane protein; No significant database matches.
       0.423
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.