STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsdXDsdX permease. (445 aa)    
Predicted Functional Partners:
dsdA
Putative serine dehydratase; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
 
  
 0.805
glxK
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.576
dsdC
HTH-type transcriptional regulator DsdC; Belongs to the LysR transcriptional regulatory family.
 
     0.548
yhaO
Inner membrane transport protein.
  
     0.463
CED72074.1
Putative exported protein.
  
     0.452
CED70534.1
Carbohydrate diacid regulator (sugar diacid regulator).
 
   
 0.431
CED57017.1
PTS system, IIC component.
     
 0.403
CED57021.1
PTS system, IIBC component.
     
 0.403
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.