STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vasHSigma-54 dependent transcriptional regulator VasH. (526 aa)    
Predicted Functional Partners:
vasI
Type VI secretion-related protein VasI.
     
 0.831
CED56779.1
Type VI secretion-related protein (ImpA domain protein).
     
 0.827
rpoN
RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.804
vasG
Type VI secretion ATPase, ClpB protein; Belongs to the ClpA/ClpB family.
       0.786
vasK
Putative type VI secretion protein VasK (IcmF-related protein).
       0.741
vasB
Type VI secretion-related uncharacterized protein VasB.
     
 0.727
vasD
Type VI secretion-related lipoprotein VasD.
     
 0.726
vasF
Type VI secretion-related protein VasF.
     
 0.720
vasE
Type VI secretion-related protein VasE.
     
 0.714
CED56769.1
Type VI secretion-related lysosyme protein.
     
 0.679
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.