STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CED56792.1RHS protein; Lack of similarity at the C-terminus in comparison to other proteins. (523 aa)    
Predicted Functional Partners:
chiA
Chitinase.
 
 
 0.737
CED71069.1
Chitodextrinase.
 
 
 0.716
CED56818.1
Extracellular serine protease, subtilase family; Belongs to the peptidase S8 family.
 
  
 0.585
CED56980.1
Putative suppressor for copper-sensitivity D.
  
 
   0.576
CED56793.1
Putative uncharacterized protein; No significant database matches.
       0.537
trxA
Thioredoxin 1; Belongs to the thioredoxin family.
    
   0.512
CED70847.1
Thioredoxin.
    
   0.512
trxC
Thioredoxin 2.
    
   0.512
CED72074.1
Putative exported protein.
  
     0.494
ihfA
Integration host factor alpha-subunit (IHF-alpha); This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
    0.432
Your Current Organism:
Aliivibrio wodanis
NCBI taxonomy Id: 80852
Other names: A. wodanis, ATCC BAA-104, Aliivibrio wodanis (Lunder et al. 2000) Urbanczyk et al. 2007, DSM 22225, LMG 24053, LMG:24053, NCIMB 13582, Vibrio wodanis, Vibrio wodanis Lunder et al. 2000, strain NVI 88/441
Server load: low (18%) [HD]